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ACTIVITY Publications
Julia V. Ponomarenko, Dagmara P. Furman, Anatoly S. Frolov, Nikolay L. Podkolodny, Galina V. Orlova, Mikhail P. Ponomarenko, Nikolay A. Kolchanov and Akinori Sarai (2001) ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another. Nucleic Acids Res., 29, in print.
Ponomarenko M.P., Ponomarenko J.V., Frolov A.S., Podkolodny N.L., Savinkova L.K., Kolchanov N.A., Overton G.C. (1999) Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins. Bioinformatics, 15, 7/8, 687-703.
Kolchanov N.A., Ponomarenko M.P., Ponomarenko J.V., Frolov A.S., Podkolodny N.L. (1998) Functional sites in pro- and eukaryotic genomes: computer models for predicting activity. Mol. Biol. (Mosk), V. 32(2), P. 255-267. (Russ)
Ponomarenko M.P., Ponomarenko J.V., Frolov A.S., Podkolodny N.L., Kolchanov N.A. (1998) Database on functional DNA and RNA site activity, ACTIVITY. Russiant Patent Agency (RossPatent) Certificate No. 980059, Sept. 2, 1998, Moscow. Russia (Russ)
Ponomarenko M.P., Ponomarenko J.V., Frolov A.S., Lavryushev S.V., Kolchanov N.A. (1998) Computer presentation and authomated generation for the knowledge on the functional activity of the DNA and RNA molecules. In: "Proceedings of the Institute of the Computational Mathematics and Mathematical Geophysics ", V. 5, P. 181-198. (Russ)
Ponomarenko M.P., Kolchanov N.A., Ponomarenko J.V., Frolov A.S., Podkolodnaya O.A., Vorobyev D.V., Podkolodny N.L., Overton G.C. (1998) Revealign the conformational and physico-chemical features applicable for predicting the activity of the functional DNA sites In: " Advances in Systems, Signals, Control and Computers", (Ed. Bajic V.B.) Published by IAAMSAD & SA branch of ANS, Durban, South Africa, V. 2, P. 326-330.
Kolchanov N.A., Ponomarenko M.P., Kel A. E., Kondrakhin Yu. V., Frolov A. S., Kolpakov F. A., Kel O. V., Ananko E. A., Ignatieva E.V., Podkolodnaya O. A., Stepanenko I. L., Merkulova T. I., Babenko V. N., Vorobiev D.G, Lavryushev S.V., Ponomarenko Yu. V., Kochetov A. V., Kolesov G.B., Podkolodny N. L., Milanesi L., Wingender E., Heinemeyer T., Solovyev V.V. (1998) GeneExpress: a computer system for description, analysis, and recognition of regulatory sequences of the eukaryotic genome. ISMB, V. 6, P. 95-104.
Ponomarenko M.P., Savnikova L.K., Ponomarenko J.V., Kel A.E., Titov I.I., Kolchanov N.A. (1997) Modeling TATA-box sequences in eukaryotic genes. Mol.Biol.(Mosk). V. 31 P. 726-732. (Russ)
Ponomarenko M.P., Kolchanova A.N., Kolchanov N.A. (1997) Generating programs for predicting the activity of functional sites. J. Comput. Biol., V. 4, P. 83-90.